PT-1398 Updated way of getting MySQL PID

Changelog

@@ -1,31 +1,9 @@
 Changelog for Percona Toolkit
 
-v3.3.2 WIP release date not set yet
-
- * Improvement PT-1417: Inconsistent creation of toolkit tables
- * Fixed bug   PT-1627:	pt-mysql-summary doesn't verify which version of jemalloc is in use
- * Fixed bug   PT-1747: pt-online-schema-change: metadata lock can break database for rebuild_constraints
- * Improvement PT-1800: PTDEBUG=1 exposes passwords
- * Fixed bug   PT-1900:	pt-query-digest not hiding parameter properly sometimes when parameter=binary
- * Improvement PT-1940:	ptsoc dropswap with mysql8: revise rejection (Thanks duxthefux)
- * Fixed bug   PT-1953: pt-summary typo: Memory mamagement.
- * Fixed bug   PT-1959: go part of the toolkit still has the version 3.3.0
+ * Improvement PT-1974: Support fingerprinting for --print in pt-kill (Thanks Iwo Panowicz)
+ * Fixed bug   PT-1966: Fixed test (Thanks @yoku0825)
  * Fixed bug   PT-1965: pt-stalk --mysql-only doesn't collect mysqladmin outputs (Thanks Sergey Kuzmichev)
- * Fixed bug   PT-1966: Test no_drop_no_swap for the pt-online-schema-change is broken (Thanks Tsubasa Tanaka)
- * Fixed bug   PT-1974: Support fingerprinting for --print in pt-kill
- * Fixed bug   PT-1983:	pt-summary missing one DIMM	
- * Admin task  PT-2009: Update Go Lang dependencies
- * Admin task  PT-2011:	Make build reproducible
-
-v3.3.1 release 2021-04-28 
-
- * Fixed bug   PT-716 : pt-summary reports wrong memory size
- * Fixed bug   PT-1914: Column data lost when 'Generated' is in the column comment
- * Fixed bug   PT-1919: pt-online-schema change drop_swap can lose triggers. (Thanks Bob)
  * Fixed bug   PT-1943:	BEFORE triggers are dropped after pt-online-schema-change run
-
-v3.3.0 release 2021-01-14 
-
  * Improvement PT-1940: Added mysql version check for bug fix introduced in 8.0.14 (Thanks duxthefux)
  * Fixed bug   PT-1919: pt-online-schema change drop_swap can lose triggers. (Thanks Bob)
  * Fixed bug   PT-1914: Column data lost when 'Generated' is in the column comment
@@ -34,17 +12,17 @@ v3.3.0 release 2021-01-14
 
 v3.3.0 release 2021-01-14 
 
- * Fixed bug   PT-169 : pt-online-schema-change FKs error handling.
- * Fixed bug   PT-1518: pt-table-checksum gives error CRC32. (Thanks @ovidiustanila)
- * Fixed bug   PT-1822: pt-mongodb-summary fails on standalone mongodb instances
- * Fixed bug   PT-1829: pt-heartbeat doesn't reconnect for check-read-only
- * Improvement PT-1836: Review and consider lintian reported issues
- * Improvement PT-1851: Backslashes missing from documentation
- * Improvement PT-1853: Added --no-check-foreing-keys to pt-osc
  * Fixed bug   PT-1857: pt-heartbeat cannot reconnect. 
- * Fixed bug   PT-1859: pt-pg-summary fails for Postgres12 (Thanks Sergey Kuzmichev)
- * Fixed bug   PT-1881: pt-upgrade fails when query including format strings and SQL errors is given (Thanks Nayuta Yanagisawa)
+ * Fixed bug   PT-169 : pt-online-schema-change FKs error handling.
  * Fixed bug   PT-1892: pt-summary says sshd not running
+ * Fixed bug   PT-1881: pt-upgrade fails when query including format strings and SQL errors is given (Thanks Nayuta Yanagisawa)
+ * Fixed bug   PT-1859: pt-pg-summary fails for Postgres12 (Thanks Sergey Kuzmichev)
+ * Improvement PT-1853: Added --no-check-foreing-keys to pt-osc
+ * Improvement PT-1851: Backslashes missing from documentation
+ * Improvement PT-1836: Review and consider lintian reported issues
+ * Fixed bug   PT-1829: pt-heartbeat doesn't reconnect for check-read-only
+ * Fixed bug   PT-1822: pt-mongodb-summary fails on standalone mongodb instances
+ * Fixed bug   PT-1518: pt-table-checksum gives error CRC32. (Thanks @ovidiustanila)
 
 v3.2.0 release 2020-04-23 
 

bin/pt-stalk

@@ -822,7 +822,7 @@ collect() {
 
    local mysql_version="$(awk '/^version[^_]/{print substr($2,1,3)}' "$d/$p-variables")"
 
-   local mysql_error_log="$(awk '/^log_error /{print $2}' "$d/$p-variables")"
+   local mysql_error_log="$(awk '/^log_error/{print $2}' "$d/$p-variables")"
    if [ -z "$mysql_error_log" -a "$mysqld_pid" ]; then
       mysql_error_log="$(ls -l /proc/$mysqld_pid/fd | awk '/ 2 ->/{print $NF}')"
    fi
@@ -833,10 +833,10 @@ collect() {
       tail -f "$mysql_error_log" >"$d/$p-log_error" &
       tail_error_log_pid=$!
 
-      $CMD_MYSQLADMIN $EXT_ARGV
+      $CMD_MYSQLADMIN $EXT_ARGV debug
    else
       log "Could not find the MySQL error log"
-   fi
+   fi 
    if [ "${mysql_version}" '>' "5.1" ]; then
       local mutex="SHOW ENGINE INNODB MUTEX"
    else
@@ -869,12 +869,7 @@ collect() {
       local strace_pid=$!
    fi
 
-   local cnt=$(($OPT_RUN_TIME / $OPT_SLEEP_COLLECT))
-
-   $CMD_MYSQLADMIN $EXT_ARGV ext -i$OPT_SLEEP_COLLECT -c$cnt >>"$d/$p-mysqladmin" &
-   local mysqladmin_pid=$!
-
-   if [ ! "$OPT_MYSQL_ONLY" ]; then
+   if [ ! "$OPT_MYSQL_ONLY" ]; then 
       ps -eaF  >> "$d/$p-ps"  &
       top -bn${OPT_RUN_TIME} >> "$d/$p-top" &
 
@@ -887,9 +882,10 @@ collect() {
       if [ "$CMD_DMESG" ]; then
          local UPTIME=`cat /proc/uptime | awk '{ print $1 }'`
          local START_TIME=$(echo "$UPTIME 60" | awk '{print ($1 - $2)}')
-         $CMD_DMESG  | perl -ne 'm/\[\s*(\d+)\./; if ($1 > '${START_TIME}') { print }' >> "$d/$p-dmesg" &
+         $CMD_DMESG  | perl -ne 'm/\[\s*(\d+)\./; if ($1 > '${START_TIME}') { print }' >> "$d/$p-dmesg" & 
       fi
 
+      local cnt=$(($OPT_RUN_TIME / $OPT_SLEEP_COLLECT))
       if [ "$CMD_VMSTAT" ]; then
          $CMD_VMSTAT $OPT_SLEEP_COLLECT $cnt >> "$d/$p-vmstat" &
          $CMD_VMSTAT $OPT_RUN_TIME 2 >> "$d/$p-vmstat-overall" &
@@ -902,7 +898,10 @@ collect() {
          $CMD_MPSTAT -P ALL $OPT_SLEEP_COLLECT $cnt >> "$d/$p-mpstat" &
          $CMD_MPSTAT -P ALL $OPT_RUN_TIME 1 >> "$d/$p-mpstat-overall" &
       fi
-   fi
+
+      $CMD_MYSQLADMIN $EXT_ARGV ext -i$OPT_SLEEP_COLLECT -c$cnt >>"$d/$p-mysqladmin" &
+      local mysqladmin_pid=$!
+   fi 
 
    local have_lock_waits_table=""
    $CMD_MYSQL $EXT_ARGV -e "SHOW TABLES FROM INFORMATION_SCHEMA" \
@@ -917,7 +916,7 @@ collect() {
    local ps_instrumentation_enabled=$($CMD_MYSQL $EXT_ARGV -e 'SELECT ENABLED FROM performance_schema.setup_instruments WHERE NAME = "transaction";' \
                                       | sed "2q;d" | sed 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/')
 
-   if [ !$ps_instrumentation_enabled = "yes" ]; then
+   if [ $ps_instrumentation_enabled != "yes" ]; then
       log "Performance Schema instrumentation is disabled"
    fi
 
@@ -956,12 +955,12 @@ collect() {
          (echo $ts; df -k) >> "$d/$p-df" &
          (echo $ts; netstat -antp) >> "$d/$p-netstat"   &
          (echo $ts; netstat -s)    >> "$d/$p-netstat_s" &
-     fi
-      ($CMD_MYSQL $EXT_ARGV -e "SHOW FULL PROCESSLIST\G") \
+      fi
+      (echo $ts; $CMD_MYSQL $EXT_ARGV -e "SHOW FULL PROCESSLIST\G") \
          >> "$d/$p-processlist" &
       if [ "$have_lock_waits_table" ]; then
-         (lock_waits)   >>"$d/$p-lock-waits" &
-         (transactions) >>"$d/$p-transactions" &
+         (echo $ts; lock_waits)   >>"$d/$p-lock-waits" &
+         (echo $ts; transactions) >>"$d/$p-transactions" &
       fi
 
       if [ "${mysql_version}" '>' "5.6" ] && [ $ps_instrumentation_enabled == "yes" ]; then
@@ -969,10 +968,10 @@ collect() {
       fi
 
       if [ "${mysql_version}" '>' "5.6" ]; then
-         (ps_prepared_statements) >> "$d/$p-prepared-statements" &
+         (echo $ts; ps_prepared_statements) >> "$d/$p-prepared-statements" &
       fi
 
-      slave_status "$d/$p-slave-status" "${mysql_version}"
+      slave_status "$d/$p-slave-status" "${mysql_version}" 
 
       curr_time=$(date +'%s')
    done
@@ -1077,7 +1076,7 @@ lock_waits() {
    LEFT JOIN INFORMATION_SCHEMA.PROCESSLIST AS p ON p.id = b.trx_mysql_thread_id
    ORDER BY wait_time DESC\G"
    $CMD_MYSQL $EXT_ARGV -e "$sql2"
-}
+} 
 
 transactions() {
    $CMD_MYSQL $EXT_ARGV -e "SELECT SQL_NO_CACHE * FROM INFORMATION_SCHEMA.INNODB_TRX ORDER BY trx_id\G"
@@ -1126,8 +1125,8 @@ rocksdb_status() {
 }
 
 ps_locks_transactions() {
-   local outfile=$1
-
+   local outfile=$1 
+   
    $CMD_MYSQL $EXT_ARGV -e 'select @@performance_schema' | grep "1" &>/dev/null
 
    if [ $? -eq 0 ]; then
@@ -1163,27 +1162,28 @@ slave_status() {
    local outfile=$1
    local mysql_version=$2
 
-   local sql="SHOW SLAVE STATUS\G"
-   echo -e "\n$sql\n" >> $outfile
-   $CMD_MYSQL $EXT_ARGV -e "$sql" >> $outfile
-   if [ "${mysql_version}" '>' "5.6" ]; then
+   if [ "${mysql_version}" '<' "5.7" ]; then
+      local sql="SHOW SLAVE STATUS\G"  
+      echo -e "\n$sql\n" >> $outfile
+      $CMD_MYSQL $EXT_ARGV -e "$sql" >> $outfile
+   else
       local sql="SELECT * FROM performance_schema.replication_connection_configuration JOIN performance_schema.replication_applier_configuration USING(channel_name)\G"
       echo -e "\n$sql\n" >> $outfile
       $CMD_MYSQL $EXT_ARGV -e "$sql" >> $outfile
 
-      sql="SELECT * FROM performance_schema.replication_connection_status\G"
+      sql="SELECT * FROM replication_connection_status\G"
       echo -e "\n$sql\n" >> $outfile
       $CMD_MYSQL $EXT_ARGV -e "$sql" >> $outfile
 
-      sql="SELECT * FROM performance_schema.replication_applier_status JOIN performance_schema.replication_applier_status_by_coordinator USING(channel_name)\G"
+      sql="SELECT * FROM replication_applier_status JOIN replication_applier_status_by_coordinator USING(channel_name)\G"
       echo -e "\n$sql\n" >> $outfile
       $CMD_MYSQL $EXT_ARGV -e "$sql" >> $outfile
    fi
+
 }
 
-
 collect_mysql_variables() {
-   local outfile=$1
+   local outfile=$1 
 
    local sql="SHOW GLOBAL VARIABLES"
    echo -e "\n$sql\n" >> $outfile
@@ -1192,11 +1192,11 @@ collect_mysql_variables() {
    sql="select * from performance_schema.variables_by_thread order by thread_id, variable_name;"
    echo -e "\n$sql\n" >> $outfile
    $CMD_MYSQL $EXT_ARGV -e "$sql" >> $outfile
-
+   
    sql="select * from performance_schema.user_variables_by_thread order by thread_id, variable_name;"
    echo -e "\n$sql\n" >> $outfile
    $CMD_MYSQL $EXT_ARGV -e "$sql" >> $outfile
-
+   
    sql="select * from performance_schema.status_by_thread order by thread_id, variable_name; "
    echo -e "\n$sql\n" >> $outfile
    $CMD_MYSQL $EXT_ARGV -e "$sql" >> $outfile

go.mod

@@ -28,34 +28,11 @@ require (
 
 require (
 	github.com/StackExchange/wmi v0.0.0-20180116203802-5d049714c4a6 // indirect
-	github.com/alecthomas/template v0.0.0-20190718012654-fb15b899a751 // indirect
 	github.com/alecthomas/units v0.0.0-20210208195552-ff826a37aa15 // indirect
-	github.com/davecgh/go-spew v1.1.1 // indirect
 	github.com/go-ole/go-ole v1.2.4 // indirect
-	github.com/go-stack/stack v1.8.0 // indirect
-	github.com/gogo/protobuf v1.3.1 // indirect
 	github.com/golang/snappy v0.0.2-0.20190904063534-ff6b7dc882cf // indirect
-	github.com/google/gofuzz v1.1.0 // indirect
-	github.com/json-iterator/go v1.1.10 // indirect
 	github.com/klauspost/compress v1.10.10 // indirect
-	github.com/konsorten/go-windows-terminal-sequences v1.0.3 // indirect
-	github.com/modern-go/concurrent v0.0.0-20180306012644-bacd9c7ef1dd // indirect
-	github.com/modern-go/reflect2 v1.0.1 // indirect
-	github.com/pmezard/go-difflib v1.0.0 // indirect
-	github.com/xdg-go/pbkdf2 v1.0.0 // indirect
-	github.com/xdg-go/scram v1.0.2 // indirect
-	github.com/xdg-go/stringprep v1.0.2 // indirect
-	github.com/youmark/pkcs8 v0.0.0-20181117223130-1be2e3e5546d // indirect
 	golang.org/x/net v0.0.0-20210805182204-aaa1db679c0d // indirect
-	golang.org/x/sync v0.0.0-20190911185100-cd5d95a43a6e // indirect
-	golang.org/x/sys v0.0.0-20210423082822-04245dca01da // indirect
-	golang.org/x/text v0.3.6 // indirect
-	gopkg.in/alecthomas/kingpin.v2 v2.2.6 // indirect
-	gopkg.in/inf.v0 v0.9.1 // indirect
 	gopkg.in/ini.v1 v1.62.0 // indirect
-	gopkg.in/yaml.v2 v2.3.0 // indirect
 	gopkg.in/yaml.v3 v3.0.0-20200615113413-eeeca48fe776 // indirect
-	k8s.io/apimachinery v0.18.6 // indirect
-	k8s.io/klog v1.0.0 // indirect
-	sigs.k8s.io/structured-merge-diff/v3 v3.0.0 // indirect
 )

lib/bash/collect.sh

@@ -52,7 +52,8 @@ collect() {
    local mysqld_pid=""
    # Get pidof mysqld.
    if [ ! "$OPT_MYSQL_ONLY" ]; then
-      mysqld_pid=$(_pidof mysqld | awk '{print $1; exit;}')
+      port=$(mysql -ss -e 'SELECT @@port')
+      mysqld_pid=$(lsof -i ":${port}" | grep -i listen | cut -f 3 -d" ")
    fi
 
    # Get memory allocation info before anything else.