diff --git a/t/pt-table-sync/bugs.t b/t/pt-table-sync/bugs.t
new file mode 100644
index 00000000..dcf43d60
--- /dev/null
+++ b/t/pt-table-sync/bugs.t
@@ -0,0 +1,106 @@
+#!/usr/bin/env perl
+
+BEGIN {
+   die "The PERCONA_TOOLKIT_BRANCH environment variable is not set.\n"
+      unless $ENV{PERCONA_TOOLKIT_BRANCH} && -d $ENV{PERCONA_TOOLKIT_BRANCH};
+   unshift @INC, "$ENV{PERCONA_TOOLKIT_BRANCH}/lib";
+};
+
+use strict;
+use warnings FATAL => 'all';
+use English qw(-no_match_vars);
+use Test::More;
+use Data::Dumper;
+
+use PerconaTest;
+use Sandbox;
+require "$trunk/bin/pt-table-sync";
+
+my $output;
+my $dp = new DSNParser(opts=>$dsn_opts);
+my $sb = new Sandbox(basedir => '/tmp', DSNParser => $dp);
+my $master_dbh = $sb->get_dbh_for('master');
+my $slave_dbh  = $sb->get_dbh_for('slave1');
+
+if ( !$master_dbh ) {
+   plan skip_all => 'Cannot connect to sandbox master';
+}
+elsif ( !$slave_dbh ) {
+   plan skip_all => 'Cannot connect to sandbox slave';
+}
+else {
+   plan tests => 4;
+}
+
+my $sample     = "t/pt-table-sync/samples";
+my $master_dsn = "h=127.1,P=12345,u=msandbox,p=msandbox";
+my $slave_dsn  = "h=127.1,P=12346,u=msandbox,p=msandbox";
+
+# #############################################################################
+# 
+# #############################################################################
+
+$sb->load_file('master', "$sample/wrong-tbl-struct-bug-1003014.sql");
+PerconaTest::wait_for_table($slave_dbh, "test.zzz", "id=111");
+
+# Make a diff in each table.
+$slave_dbh->do("DELETE FROM test.aaa WHERE STOP_ARCHIVE IN (5,6,7)");
+$slave_dbh->do("UPDATE test.zzz SET c='x' WHERE id IN (44,45,46)");
+
+$output = `$trunk/bin/pt-table-checksum $master_dsn --lock-wait-timeout 3 --max-load '' -d test --chunk-size 10 2>&1`;
+
+is(
+   PerconaTest::count_checksum_results($output, 'diffs'),
+   2,
+   "Bug 1003014 (wrong tbl_struct): 2 diffs"
+) or print STDERR $output;
+
+my $rows = $master_dbh->selectall_arrayref("SELECT db, tbl, chunk FROM percona.checksums ORDER BY db, tbl, chunk");
+is_deeply(
+   $rows,
+   [
+      [qw( test aaa 1 )],
+      [qw( test zzz 1 )],
+      [qw( test zzz 2 )],
+      [qw( test zzz 3 )],
+      [qw( test zzz 4 )],
+      [qw( test zzz 5 )],
+      [qw( test zzz 6 )],
+      [qw( test zzz 7 )],
+      [qw( test zzz 8 )],
+      [qw( test zzz 9 )],
+      [qw( test zzz 10 )],
+      [qw( test zzz 11 )],
+      [qw( test zzz 12 )],
+      [qw( test zzz 13 )],
+      [qw( test zzz 14 )],
+   ],
+   "Bug 1003014 (wrong tbl_struct): checksums"
+);
+
+my $exit_status;
+$output = output(
+   sub { $exit_status = pt_table_sync::main($slave_dsn,
+      qw(--replicate percona.checksums --sync-to-master --print),
+      "--tables", "test.aaa,test.zzz") },
+   stderr => 1,
+);
+
+is(
+   $exit_status,
+   2,  # rows synced OK; 3=error (1) & rows synced (2)
+   "Bug 1003014 (wrong tbl_struct): 0 exit"
+) or diag($output);
+
+$rows = $slave_dbh->selectall_arrayref("SELECT c FROM test.zzz WHERE id IN (44,45,46)");
+is_deeply(
+   $rows,
+   [ ['a'], ['a'], ['a'] ],
+   "Bug 1003014 (wrong tbl_struct): synced rows"
+);
+
+# #############################################################################
+# Done.
+# #############################################################################
+$sb->wipe_clean($master_dbh);
+exit;
diff --git a/t/pt-table-sync/samples/wrong-tbl-struct-bug-1003014.sql b/t/pt-table-sync/samples/wrong-tbl-struct-bug-1003014.sql
new file mode 100644
index 00000000..8fe2f00f
--- /dev/null
+++ b/t/pt-table-sync/samples/wrong-tbl-struct-bug-1003014.sql
@@ -0,0 +1,35 @@
+drop database if exists test;
+create database test;
+use test;
+
+--
+-- Checksum aaa in one chunk, make it differ, sync it first.
+--
+create table aaa (
+  `STOP_ARCHIVE` int(11) NOT NULL default '1',
+  UNIQUE KEY `STOP_ARCHIVE` (`STOP_ARCHIVE`)
+) ENGINE=MyISAM;
+
+insert into aaa values (1),(2),(3),(4),(5),(6),(7),(8),(9),(10);
+
+--
+-- Checksum zzz in chunks, make a chunk differ, sync it 2nd.
+--
+create table `zzz` (
+  id int not null primary key,
+  c varchar(16) not null
+);
+
+insert into zzz values
+  (1,'a'),(2,'a'),(3,'a'),(4,'a'),(5,'a'),(6,'a'),(7,'a'),(8,'a'),(9,'a'),(10,'a'),
+  (11,'a'),(12,'a'),(13,'a'),(14,'a'),(15,'a'),(16,'a'),(17,'a'),(18,'a'),(19,'a'),(20,'a'),
+  (21,'a'),(22,'a'),(23,'a'),(24,'a'),(25,'a'),(26,'a'),(27,'a'),(28,'a'),(29,'a'),(30,'a'),
+  (31,'a'),(32,'a'),(33,'a'),(34,'a'),(35,'a'),(36,'a'),(37,'a'),(38,'a'),(39,'a'),(40,'a'),
+  (41,'a'),(42,'a'),(43,'a'),(44,'a'),(45,'a'),(46,'a'),(47,'a'),(48,'a'),(49,'a'),(50,'a'),
+  (51,'a'),(52,'a'),(53,'a'),(54,'a'),(55,'a'),(56,'a'),(57,'a'),(58,'a'),(59,'a'),(60,'a'),
+  (61,'a'),(62,'a'),(63,'a'),(64,'a'),(65,'a'),(66,'a'),(67,'a'),(68,'a'),(69,'a'),(70,'a'),
+  (71,'a'),(72,'a'),(73,'a'),(74,'a'),(75,'a'),(76,'a'),(77,'a'),(78,'a'),(79,'a'),(80,'a'),
+  (81,'a'),(82,'a'),(83,'a'),(84,'a'),(85,'a'),(86,'a'),(87,'a'),(88,'a'),(89,'a'),(90,'a'),
+  (91,'a'),(92,'a'),(93,'a'),(94,'a'),(95,'a'),(96,'a'),(97,'a'),(98,'a'),(99,'a'),(100,'a'),
+  (101,'a'),(102,'a'),(103,'a'),(104,'a'),(105,'a'),(106,'a'),(107,'a'),(108,'a'),(109,'a'),(110,'a'),
+  (111, 'a');