PT-2156 Fix tests for lib, part2 (#650)

* PT-2156 - Fix tests for lib

Fixed tests, broken by putting fix for PT-1554 into the library code, mostly by updating checksums.
Added AutoCommit option for test lib/QueryReview.t
Reset SQL mode to empty to allow TableChunker to work with invalid and zero dates

* PT-2156 - Fix tests for lib

Adjusted t/lib/SchemaIterator.t to work with version 8.0

* PT-2156 - Fix tests for lib

Adjusted b/t/lib/Processlist.t, so it reflects fix for PT-981

* PT-2156 - Fix tests for lib

Adjusted t/lib/HTTP/Micro.t, so it works with different order of parameters, returned at v.percona.com/
Adjusted test for empty files in t/lib/bash/collect.t
Disabled mysqladmin debug test in t/lib/bash/collect.t, because of PT-2242

* PT-2156 - Fix tests for lib

Added LC_NUMERRIC=POSIX into t/lib/bash/report_system_info.sh, so reports in tests are not environment-dependent
Updated expected results in t/lib/bash/report_system_info.sh, so they reflect new information, collected by pt-summary

* PT-2156 - Fix tests for lib

- Improved fix for PT-76, so it handles inline comments
- Added test case for PT-76
- Improved fix for PT-1720, so it ignores unrecognizable option only if it comes from the toolkit-wide files and still errors out if wrong option was passed via command line or the tool-specific option file.

* PT-2156 - Fix tests for lib

- Improved fix for PT-2102, so it finds running instance configuration file using PID and also does not break t/lib/bash/report_mysql_info.t test
- Removed unnecessary copy-paste from t/pt-mysql-summary/pt-2102.t test
- Adjusted number of collected files in t/lib/bash/collect_mysql_info.sh

* PT-2156 - Fix tests for lib

- Fix for PT-1543 and MyRocks collection were originally put only into lib/bash/report_mysql_info.shthat broke the logic of collecting data first, then formatting report from this data. This, in its turn, broke test t/lib/bash/report_mysql_info.sh/t/lib/bash/report_mysql_info.t, because CMD_MYSQL is not defined in this library. I rewrote these fixes, so they follow original logic of the tool (pt-mysql-summary)
- Added tests for keyring plugin, encrypted tables, and MyRocks for t/lib/bash/report_mysql_info.sh and t/pt-mysql-summary/pt-mysql-summary_encryption.t

* PT-2156 - Fix tests for lib

- Added FLUSH TABLES to t/lib/bash/collect.sh, so it does not fail opentables tests if run when more than 1000 tables open in the sandbox environment
- Changed number of expected sample files to reflect keyring colletion file

* PT-2156 - Fix tests for lib

- Added skip to some tests in lib that file when run with PXC, because not supported to work with PXC
- Adjusted configuration files for PXC, so they allow LOAD DATA/SELECT INTO OUTFILE commands
- Adjusted data samples, so they do not depend on auto increment values
- Fixed lib tests, failing with PXC

* PT-2156 - Fix tests for lib

Updated tests for pt-online-schema-change, so they work with PXC and skipped if designed for semi-synchronous replication setup

* PT-2156 - Fix tests for lib

- Added cluster-specific samples for t/lib/SchemaIterator.t
- Removed extra debugging print from t/pt-table-checksum/pt-1728.t

* PT-2156 - Fix tests for lib

Evgeniy's review on July 20

* Update t/lib/TableSyncer.t

Removed comment left after debugging

* Update t/pt-mysql-summary/pt-mysql-summary_encryption.t

Removed extra debug output

* PT-2156 - Fix tests for lib

Tabs to spaces

bin/pt-ioprofile

@@ -75,6 +75,7 @@ OPT_VERSION=""    # If --version was specified
 OPT_HELP=""       # If --help was specified
 OPT_ASK_PASS=""   # If --ask-pass was specified
 PO_DIR=""         # Directory with program option spec files
+GLOBAL_CONFIG=0   # We ignore non-recognized options in global configs
 
 usage() {
    local file="$1"
@@ -203,9 +204,15 @@ parse_options() {
          _parse_config_files "$user_config_file"
       done
    else
-      _parse_config_files "/etc/percona-toolkit/percona-toolkit.conf" "/etc/percona-toolkit/$TOOL.conf"
+       GLOBAL_CONFIG=1
+      _parse_config_files "/etc/percona-toolkit/percona-toolkit.conf"
+       GLOBAL_CONFIG=0
+       _parse_config_files "/etc/percona-toolkit/$TOOL.conf"
       if [ "${HOME:-}" ]; then
-         _parse_config_files "$HOME/.percona-toolkit.conf" "$HOME/.$TOOL.conf"
+         GLOBAL_CONFIG=1
+         _parse_config_files "$HOME/.percona-toolkit.conf"
+         GLOBAL_CONFIG=0
+         _parse_config_files "$HOME/.$TOOL.conf"
       fi
    fi
 
@@ -312,7 +319,7 @@ _parse_config_files() {
 
          echo "$config_opt" | grep '^[ ]*[^#]' >/dev/null 2>&1 || continue
 
-         config_opt="$(echo "$config_opt" | sed -e 's/^ *//g' -e 's/ *$//g' -e 's/[ ]*=[ ]*/=/' -e 's/[ ]+#.*$//')"
+		 config_opt="$(echo "$config_opt" | sed -e 's/^ *//g' -e 's/ *$//g' -e 's/[ ]*=[ ]*/=/' -e 's/\s[ ]*#.*$//')"
 
          [ "$config_opt" = "" ] && continue
 
@@ -404,7 +411,11 @@ _parse_command_line() {
          else
             spec=$(grep "^short form:-$opt\$" "$PT_TMPDIR"/po/* | cut -d ':' -f 1)
             if [ -z "$spec"  ]; then
-               continue
+               if [ $GLOBAL_CONFIG -eq 1 ]; then
+                  continue
+               else
+                  option_error "Unknown option: $real_opt"
+               fi
             fi
          fi