PT 2105 collect individual logs (#558)

* PT-2105 - Collect individual log files for PXC

Combined log files are hard to read by humans. Since pt-k8-debug-collector is the tool that
accesses data from the running pods, it can copy raw log files, necessary for troubleshooting PXC issues.
So, in addition to collecting logs.txt, this adds method getIndividualFiles for the Dumper that
reads individual files from PXC pods and stores them in the resulting archive.

Additionally, this commit fixes invalid timestamps in the resulting archive.

* PT-2105 - added support for non-default namespaces

* PT-2105 Let pt-k8-debug-collector to collect individual logs in PXC pods

Added test case for this new collection.

* Update go.mod

Co-authored-by: Viacheslav Sarzhan <slava.sarzhan@percona.com>

Co-authored-by: Viacheslav Sarzhan <slava.sarzhan@percona.com>

go.mod

@@ -1,8 +1,9 @@
 module github.com/percona/percona-toolkit
 
-go 1.17
+go 1.19
 
 require (
+	github.com/AlekSi/pointer v1.2.0
 	github.com/Masterminds/semver v1.4.2
 	github.com/alecthomas/kingpin v2.2.6+incompatible
 	github.com/alecthomas/kong v0.5.0
@@ -22,12 +23,12 @@ require (
 	github.com/stretchr/testify v1.7.0
 	go.mongodb.org/mongo-driver v1.9.0
 	golang.org/x/crypto v0.0.0-20220331220935-ae2d96664a29
+	golang.org/x/exp v0.0.0-20221114191408-850992195362
 	gopkg.in/mgo.v2 v2.0.0-20190816093944-a6b53ec6cb22
 	k8s.io/api v0.23.5
 )
 
 require (
-	github.com/StackExchange/wmi v1.2.1 // indirect
 	github.com/alecthomas/template v0.0.0-20190718012654-fb15b899a751 // indirect
 	github.com/alecthomas/units v0.0.0-20211218093645-b94a6e3cc137 // indirect
 	github.com/davecgh/go-spew v1.1.1 // indirect
@@ -36,17 +37,13 @@ require (
 	github.com/go-stack/stack v1.8.1 // indirect
 	github.com/gogo/protobuf v1.3.2 // indirect
 	github.com/golang/snappy v0.0.4 // indirect
-	github.com/google/go-cmp v0.5.7 // indirect
+	github.com/google/go-cmp v0.5.8 // indirect
 	github.com/google/gofuzz v1.2.0 // indirect
 	github.com/json-iterator/go v1.1.12 // indirect
 	github.com/klauspost/compress v1.15.1 // indirect
-	github.com/konsorten/go-windows-terminal-sequences v1.0.3 // indirect
-	github.com/kr/text v0.2.0 // indirect
 	github.com/modern-go/concurrent v0.0.0-20180306012644-bacd9c7ef1dd // indirect
 	github.com/modern-go/reflect2 v1.0.2 // indirect
 	github.com/pmezard/go-difflib v1.0.0 // indirect
-	github.com/rogpeppe/go-internal v1.6.1 // indirect
-	github.com/smartystreets/goconvey v1.7.2 // indirect
 	github.com/tklauser/go-sysconf v0.3.10 // indirect
 	github.com/tklauser/numcpus v0.4.0 // indirect
 	github.com/xdg-go/pbkdf2 v1.0.0 // indirect
@@ -56,20 +53,15 @@ require (
 	github.com/yusufpapurcu/wmi v1.2.2 // indirect
 	golang.org/x/net v0.0.0-20220403103023-749bd193bc2b // indirect
 	golang.org/x/sync v0.0.0-20210220032951-036812b2e83c // indirect
-	golang.org/x/sys v0.0.0-20220406163625-3f8b81556e12 // indirect
+	golang.org/x/sys v0.1.0 // indirect
 	golang.org/x/term v0.0.0-20210927222741-03fcf44c2211 // indirect
 	golang.org/x/text v0.3.7 // indirect
-	golang.org/x/xerrors v0.0.0-20200804184101-5ec99f83aff1 // indirect
-	gopkg.in/check.v1 v1.0.0-20200227125254-8fa46927fb4f // indirect
 	gopkg.in/inf.v0 v0.9.1 // indirect
-	gopkg.in/ini.v1 v1.62.0 // indirect
 	gopkg.in/yaml.v2 v2.4.0 // indirect
 	gopkg.in/yaml.v3 v3.0.0-20210107192922-496545a6307b // indirect
 	k8s.io/apimachinery v0.23.5 // indirect
-	k8s.io/klog v1.0.0 // indirect
 	k8s.io/klog/v2 v2.60.1 // indirect
 	k8s.io/utils v0.0.0-20220210201930-3a6ce19ff2f9 // indirect
 	sigs.k8s.io/json v0.0.0-20211208200746-9f7c6b3444d2 // indirect
-	sigs.k8s.io/structured-merge-diff/v3 v3.0.1 // indirect
 	sigs.k8s.io/structured-merge-diff/v4 v4.2.1 // indirect
 )

go.sum

@@ -1,25 +1,20 @@
 cloud.google.com/go v0.26.0/go.mod h1:aQUYkXzVsufM+DwF1aE+0xfcU+56JwCaLick0ClmMTw=
+github.com/AlekSi/pointer v1.2.0 h1:glcy/gc4h8HnG2Z3ZECSzZ1IX1x2JxRVuDzaJwQE0+w=
+github.com/AlekSi/pointer v1.2.0/go.mod h1:gZGfd3dpW4vEc/UlyfKKi1roIqcCgwOIvb0tSNSBle0=
 github.com/BurntSushi/toml v0.3.1/go.mod h1:xHWCNGjB5oqiDr8zfno3MHue2Ht5sIBksp03qcyfWMU=
 github.com/Masterminds/semver v1.4.2 h1:WBLTQ37jOCzSLtXNdoo8bNM8876KhNqOKvrlGITgsTc=
 github.com/Masterminds/semver v1.4.2/go.mod h1:MB6lktGJrhw8PrUyiEoblNEGEQ+RzHPF078ddwwvV3Y=
 github.com/NYTimes/gziphandler v0.0.0-20170623195520-56545f4a5d46/go.mod h1:3wb06e3pkSAbeQ52E9H9iFoQsEEwGN64994WTCIhntQ=
-github.com/PuerkitoBio/purell v1.0.0/go.mod h1:c11w/QuzBsJSee3cPx9rAFu61PvFxuPbtSwDGJws/X0=
 github.com/PuerkitoBio/purell v1.1.1/go.mod h1:c11w/QuzBsJSee3cPx9rAFu61PvFxuPbtSwDGJws/X0=
-github.com/PuerkitoBio/urlesc v0.0.0-20160726150825-5bd2802263f2/go.mod h1:uGdkoq3SwY9Y+13GIhn11/XLaGBb4BfwItxLd5jeuXE=
 github.com/PuerkitoBio/urlesc v0.0.0-20170810143723-de5bf2ad4578/go.mod h1:uGdkoq3SwY9Y+13GIhn11/XLaGBb4BfwItxLd5jeuXE=
-github.com/StackExchange/wmi v0.0.0-20180116203802-5d049714c4a6 h1:fLjPD/aNc3UIOA6tDi6QXUemppXK3P9BI7mr2hd6gx8=
-github.com/StackExchange/wmi v0.0.0-20180116203802-5d049714c4a6/go.mod h1:3eOhrUMpNV+6aFIbp5/iudMxNCF27Vw2OZgy4xEx0Fg=
-github.com/StackExchange/wmi v1.2.1 h1:VIkavFPXSjcnS+O8yTq7NI32k0R5Aj+v39y29VYDOSA=
-github.com/StackExchange/wmi v1.2.1/go.mod h1:rcmrprowKIVzvc+NUiLncP2uuArMWLCbu9SBzvHz7e8=
 github.com/alecthomas/kingpin v2.2.6+incompatible h1:5svnBTFgJjZvGKyYBtMB0+m5wvrbUHiqye8wRJMlnYI=
 github.com/alecthomas/kingpin v2.2.6+incompatible/go.mod h1:59OFYbFVLKQKq+mqrL6Rw5bR0c3ACQaawgXx0QYndlE=
 github.com/alecthomas/kong v0.5.0 h1:u8Kdw+eeml93qtMZ04iei0CFYve/WPcA5IFh+9wSskE=
 github.com/alecthomas/kong v0.5.0/go.mod h1:uzxf/HUh0tj43x1AyJROl3JT7SgsZ5m+icOv1csRhc0=
+github.com/alecthomas/repr v0.0.0-20210801044451-80ca428c5142 h1:8Uy0oSf5co/NZXje7U1z8Mpep++QJOldL2hs/sBQf48=
 github.com/alecthomas/repr v0.0.0-20210801044451-80ca428c5142/go.mod h1:2kn6fqh/zIyPLmm3ugklbEi5hg5wS435eygvNfaDQL8=
 github.com/alecthomas/template v0.0.0-20190718012654-fb15b899a751 h1:JYp7IbQjafoB+tBA3gMyHYHrpOtNuDiK/uB5uXxq5wM=
 github.com/alecthomas/template v0.0.0-20190718012654-fb15b899a751/go.mod h1:LOuyumcjzFXgccqObfd/Ljyb9UuFJ6TxHnclSeseNhc=
-github.com/alecthomas/units v0.0.0-20210208195552-ff826a37aa15 h1:AUNCr9CiJuwrRYS3XieqF+Z9B9gNxo/eANAJCF2eiN4=
-github.com/alecthomas/units v0.0.0-20210208195552-ff826a37aa15/go.mod h1:OMCwj8VM1Kc9e19TLln2VL61YJF0x1XFtfdL4JdbSyE=
 github.com/alecthomas/units v0.0.0-20211218093645-b94a6e3cc137 h1:s6gZFSlWYmbqAuRjVTiNNhvNRfY2Wxp9nhfyel4rklc=
 github.com/alecthomas/units v0.0.0-20211218093645-b94a6e3cc137/go.mod h1:OMCwj8VM1Kc9e19TLln2VL61YJF0x1XFtfdL4JdbSyE=
 github.com/asaskevich/govalidator v0.0.0-20190424111038-f61b66f89f4a/go.mod h1:lB+ZfQJz7igIIfQNfa7Ml4HSf2uFQQRzpGGRXenZAgY=
@@ -29,21 +24,16 @@ github.com/creack/pty v1.1.9/go.mod h1:oKZEueFk5CKHvIhNR5MUki03XCEU+Q6VDXinZuGJ3
 github.com/davecgh/go-spew v1.1.0/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
 github.com/davecgh/go-spew v1.1.1 h1:vj9j/u1bqnvCEfJOwUhtlOARqs3+rkHYY13jYWTU97c=
 github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
-github.com/docker/spdystream v0.0.0-20160310174837-449fdfce4d96/go.mod h1:Qh8CwZgvJUkLughtfhJv5dyTYa91l1fOUCrgjqmcifM=
 github.com/docopt/docopt-go v0.0.0-20180111231733-ee0de3bc6815/go.mod h1:WwZ+bS3ebgob9U8Nd0kOddGdZWjyMGR8Wziv+TBNwSE=
 github.com/elazarl/goproxy v0.0.0-20180725130230-947c36da3153/go.mod h1:/Zj4wYkgs4iZTTu3o/KG3Itv/qCCa8VVMlb3i9OVuzc=
 github.com/emicklei/go-restful v0.0.0-20170410110728-ff4f55a20633/go.mod h1:otzb+WCGbkyDHkqmQmT5YD2WR4BBwUdeQoFo8l/7tVs=
 github.com/envoyproxy/go-control-plane v0.9.1-0.20191026205805-5f8ba28d4473/go.mod h1:YTl/9mNaCwkRvm6d1a2C3ymFceY/DCBVvsKhRF0iEA4=
 github.com/envoyproxy/protoc-gen-validate v0.1.0/go.mod h1:iSmxcyjqTsJpI2R4NaDN7+kN2VEUnK/pcBlmesArF7c=
-github.com/evanphx/json-patch v4.2.0+incompatible/go.mod h1:50XU6AFN0ol/bzJsmQLiYLvXMP4fmwYFNcr97nuDLSk=
 github.com/evanphx/json-patch v4.12.0+incompatible/go.mod h1:50XU6AFN0ol/bzJsmQLiYLvXMP4fmwYFNcr97nuDLSk=
 github.com/fsnotify/fsnotify v1.4.7/go.mod h1:jwhsz4b93w/PPRr/qN1Yymfu8t87LnFCMoQvtojpjFo=
 github.com/fsnotify/fsnotify v1.4.9/go.mod h1:znqG4EE+3YCdAaPaxE2ZRY/06pZUdp0tY4IgpuI1SZQ=
 github.com/getkin/kin-openapi v0.76.0/go.mod h1:660oXbgy5JFMKreazJaQTw7o+X00qeSyhcnluiMv+Xg=
-github.com/ghodss/yaml v0.0.0-20150909031657-73d445a93680/go.mod h1:4dBDuWmgqj2HViK6kFavaiC9ZROes6MMH2rRYeMEF04=
 github.com/ghodss/yaml v1.0.0/go.mod h1:4dBDuWmgqj2HViK6kFavaiC9ZROes6MMH2rRYeMEF04=
-github.com/go-ini/ini v1.46.0 h1:hDJFfs/9f75875scvqLkhNB5Jz5/DybKEOZ5MLF+ng4=
-github.com/go-ini/ini v1.46.0/go.mod h1:ByCAeIL28uOIIG0E3PJtZPDL8WnHpFKFOtgjp+3Ies8=
 github.com/go-ini/ini v1.66.4 h1:dKjMqkcbkzfddhIhyglTPgMoJnkvmG+bSLrU9cTHc5M=
 github.com/go-ini/ini v1.66.4/go.mod h1:ByCAeIL28uOIIG0E3PJtZPDL8WnHpFKFOtgjp+3Ies8=
 github.com/go-logr/logr v0.1.0/go.mod h1:ixOQHD9gLJUVQQ2ZOR7zLEifBX6tGkNJF4QyIY7sIas=
@@ -51,55 +41,21 @@ github.com/go-logr/logr v0.2.0/go.mod h1:z6/tIYblkpsD+a4lm/fGIIU9mZ+XfAiaFtq7xTg
 github.com/go-logr/logr v1.2.0/go.mod h1:jdQByPbusPIv2/zmleS9BjJVeZ6kBagPoEUsqbVz/1A=
 github.com/go-logr/logr v1.2.3 h1:2DntVwHkVopvECVRSlL5PSo9eG+cAkDCuckLubN+rq0=
 github.com/go-logr/logr v1.2.3/go.mod h1:jdQByPbusPIv2/zmleS9BjJVeZ6kBagPoEUsqbVz/1A=
-github.com/go-ole/go-ole v1.2.4 h1:nNBDSCOigTSiarFpYE9J/KtEA1IOW4CNeqT9TQDqCxI=
-github.com/go-ole/go-ole v1.2.4/go.mod h1:XCwSNxSkXRo4vlyPy93sltvi/qJq0jqQhjqQNIwKuxM=
-github.com/go-ole/go-ole v1.2.5/go.mod h1:pprOEPIfldk/42T2oK7lQ4v4JSDwmV0As9GaiUsvbm0=
 github.com/go-ole/go-ole v1.2.6 h1:/Fpf6oFPoeFik9ty7siob0G6Ke8QvQEuVcuChpwXzpY=
 github.com/go-ole/go-ole v1.2.6/go.mod h1:pprOEPIfldk/42T2oK7lQ4v4JSDwmV0As9GaiUsvbm0=
-github.com/go-openapi/jsonpointer v0.0.0-20160704185906-46af16f9f7b1/go.mod h1:+35s3my2LFTysnkMfxsJBAMHj/DoqoB9knIWoYG/Vk0=
 github.com/go-openapi/jsonpointer v0.19.3/go.mod h1:Pl9vOtqEWErmShwVjC8pYs9cog34VGT37dQOVbmoatg=
 github.com/go-openapi/jsonpointer v0.19.5/go.mod h1:Pl9vOtqEWErmShwVjC8pYs9cog34VGT37dQOVbmoatg=
-github.com/go-openapi/jsonreference v0.0.0-20160704190145-13c6e3589ad9/go.mod h1:W3Z9FmVs9qj+KR4zFKmDPGiLdk1D9Rlm7cyMvf57TTg=
 github.com/go-openapi/jsonreference v0.19.3/go.mod h1:rjx6GuL8TTa9VaixXglHmQmIL98+wF9xc8zWvFonSJ8=
-github.com/go-openapi/spec v0.0.0-20160808142527-6aced65f8501/go.mod h1:J8+jY1nAiCcj+friV/PDoE1/3eeccG9LYBs0tYvLOWc=
-github.com/go-openapi/swag v0.0.0-20160704191624-1d0bd113de87/go.mod h1:DXUve3Dpr1UfpPtxFw+EFuQ41HhCWZfha5jSVRG7C7I=
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-github.com/go-stack/stack v1.8.0 h1:5SgMzNM5HxrEjV0ww2lTmX6E2Izsfxas4+YHWRs3Lsk=
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@@ -112,8 +68,6 @@ github.com/golang/protobuf v1.4.2/go.mod h1:oDoupMAO8OvCJWAcko0GGGIgR6R6ocIYbsSw
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@@ -284,15 +170,12 @@ github.com/tklauser/numcpus v0.4.0 h1:E53Dm1HjH1/R2/aoCtXtPgzmElmn51aOkhCFSuZq//
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@@ -301,28 +184,24 @@ github.com/yuin/goldmark v1.2.1/go.mod h1:3hX8gzYuyVAZsxl0MRgGTJEmQBFcNTphYh9dec
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@@ -331,42 +210,28 @@ golang.org/x/net v0.0.0-20190311183353-d8887717615a/go.mod h1:t9HGtf8HONx5eT2rtn
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 golang.org/x/sys v0.0.0-20190215142949-d0b11bdaac8a/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=
-golang.org/x/sys v0.0.0-20190403152447-81d4e9dc473e/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20190412213103-97732733099d/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
-golang.org/x/sys v0.0.0-20190419153524-e8e3143a4f4a/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
-golang.org/x/sys v0.0.0-20190422165155-953cdadca894/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
-golang.org/x/sys v0.0.0-20190531175056-4c3a928424d2/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20190904154756-749cb33beabd/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20190916202348-b4ddaad3f8a3/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20191005200804-aed5e4c7ecf9/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
-golang.org/x/sys v0.0.0-20191022100944-742c48ecaeb7/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20191026070338-33540a1f6037/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20191120155948-bd437916bb0e/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20200323222414-85ca7c5b95cd/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
@@ -376,35 +241,25 @@ golang.org/x/sys v0.0.0-20201119102817-f84b799fce68/go.mod h1:h1NjWce9XRLGQEsW7w
 golang.org/x/sys v0.0.0-20210330210617-4fbd30eecc44/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20210423082822-04245dca01da/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20210510120138-977fb7262007/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
-golang.org/x/sys v0.0.0-20210603081109-ebe580a85c40 h1:JWgyZ1qgdTaF3N3oxC+MdTV7qvEEgHo3otj+HB5CM7Q=
-golang.org/x/sys v0.0.0-20210603081109-ebe580a85c40/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.0.0-20210831042530-f4d43177bf5e/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.0.0-20220128215802-99c3d69c2c27/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
-golang.org/x/sys v0.0.0-20220406163625-3f8b81556e12 h1:QyVthZKMsyaQwBTJE04jdNN0Pp5Fn9Qga0mrgxyERQM=
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-golang.org/x/sys v0.0.0-20220406163625-3f8b81556e12/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
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-golang.org/x/text v0.3.6 h1:aRYxNxv6iGQlyVaZmk6ZgYEDa+Jg18DxebPSrd6bg1M=
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-golang.org/x/tools v0.0.0-20181030221726-6c7e314b6563/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ=
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-golang.org/x/tools v0.0.0-20190328211700-ab21143f2384/go.mod h1:LCzVGOaR6xXOjkQ3onu1FJEFr0SW1gC7cKk1uF8kGRs=
-golang.org/x/tools v0.0.0-20190329151228-23e29df326fe/go.mod h1:LCzVGOaR6xXOjkQ3onu1FJEFr0SW1gC7cKk1uF8kGRs=
-golang.org/x/tools v0.0.0-20190416151739-9c9e1878f421/go.mod h1:LCzVGOaR6xXOjkQ3onu1FJEFr0SW1gC7cKk1uF8kGRs=
-golang.org/x/tools v0.0.0-20190420181800-aa740d480789/go.mod h1:LCzVGOaR6xXOjkQ3onu1FJEFr0SW1gC7cKk1uF8kGRs=
 golang.org/x/tools v0.0.0-20190425150028-36563e24a262/go.mod h1:RgjU9mgBXZiqYHBnxXauZ1Gv1EHHAz9KjViQ78xBX0Q=
 golang.org/x/tools v0.0.0-20190524140312-2c0ae7006135/go.mod h1:RgjU9mgBXZiqYHBnxXauZ1Gv1EHHAz9KjViQ78xBX0Q=
 golang.org/x/tools v0.0.0-20190531172133-b3315ee88b7d/go.mod h1:/rFqwRUd4F7ZHNgwSSTFct+R/Kf4OFW1sUzUTQQTgfc=
@@ -416,7 +271,6 @@ golang.org/x/tools v0.1.5/go.mod h1:o0xws9oXOQQZyjljx8fwUC0k7L1pTE6eaCbjGeHmOkk=
 golang.org/x/xerrors v0.0.0-20190717185122-a985d3407aa7/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
 golang.org/x/xerrors v0.0.0-20191011141410-1b5146add898/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
 golang.org/x/xerrors v0.0.0-20191204190536-9bdfabe68543/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
-golang.org/x/xerrors v0.0.0-20200804184101-5ec99f83aff1 h1:go1bK/D/BFZV2I8cIQd1NKEZ+0owSTG1fDTci4IqFcE=
 golang.org/x/xerrors v0.0.0-20200804184101-5ec99f83aff1/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
 google.golang.org/appengine v1.1.0/go.mod h1:EbEs0AVv82hx2wNQdGPgUI5lhzA/G0D9YwlJXL52JkM=
 google.golang.org/appengine v1.4.0/go.mod h1:xpcJRLb0r/rnEns0DIKYYv+WjYCduHsrkT7/EB5XEv4=
@@ -441,15 +295,12 @@ google.golang.org/protobuf v1.26.0/go.mod h1:9q0QmTI4eRPtz6boOQmLYwt+qCgq0jsYwAQ
 google.golang.org/protobuf v1.27.1/go.mod h1:9q0QmTI4eRPtz6boOQmLYwt+qCgq0jsYwAQnmE0givc=
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-gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15 h1:YR8cESwS4TdDjEe65xsg0ogRM/Nc3DYOhEAlW+xobZo=
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-gopkg.in/errgo.v2 v2.1.0/go.mod h1:hNsd1EY+bozCKY1Ytp96fpM3vjJbqLJn88ws8XvfDNI=
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 gopkg.in/inf.v0 v0.9.1 h1:73M5CoZyi3ZLMOyDlQh031Cx6N9NDJ2Vvfl76EDAgDc=
 gopkg.in/inf.v0 v0.9.1/go.mod h1:cWUDdTG/fYaXco+Dcufb5Vnc6Gp2YChqWtbxRZE0mXw=
-gopkg.in/ini.v1 v1.62.0 h1:duBzk771uxoUuOlyRLkHsygud9+5lrlGjdFBb4mSKDU=
-gopkg.in/ini.v1 v1.62.0/go.mod h1:pNLf8WUiyNEtQjuu5G5vTm06TEv9tsIgeAvK8hOrP4k=
 gopkg.in/mgo.v2 v2.0.0-20190816093944-a6b53ec6cb22 h1:VpOs+IwYnYBaFnrNAeB8UUWtL3vEUnzSCL1nVjPhqrw=
 gopkg.in/mgo.v2 v2.0.0-20190816093944-a6b53ec6cb22/go.mod h1:yeKp02qBN3iKW1OzL3MGk2IdtZzaj7SFntXj72NppTA=
 gopkg.in/tomb.v1 v1.0.0-20141024135613-dd632973f1e7/go.mod h1:dt/ZhP58zS4L8KSrWDmTeBkI65Dw0HsyUHuEVlX15mw=
@@ -461,30 +312,21 @@ gopkg.in/yaml.v2 v2.3.0/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v2 v2.4.0 h1:D8xgwECY7CYvx+Y2n4sBz93Jn9JRvxdiyyo8CTfuKaY=
 gopkg.in/yaml.v2 v2.4.0/go.mod h1:RDklbk79AGWmwhnvt/jBztapEOGDOx6ZbXqjP6csGnQ=
 gopkg.in/yaml.v3 v3.0.0-20200313102051-9f266ea9e77c/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
-gopkg.in/yaml.v3 v3.0.0-20200615113413-eeeca48fe776 h1:tQIYjPdBoyREyB9XMu+nnTclpTYkz2zFM+lzLJFO4gQ=
 gopkg.in/yaml.v3 v3.0.0-20200615113413-eeeca48fe776/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
+gopkg.in/yaml.v3 v3.0.0-20210107192922-496545a6307b h1:h8qDotaEPuJATrMmW04NCwg7v22aHH28wwpauUhK9Oo=
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-k8s.io/klog v1.0.0 h1:Pt+yjF5aB1xDSVbau4VsWe+dQNzA0qv1LlXdC2dF6Q8=
-k8s.io/klog v1.0.0/go.mod h1:4Bi6QPql/J/LkTDqv7R/cd3hPo4k2DG6Ptcz060Ez5I=
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 k8s.io/klog/v2 v2.60.1 h1:VW25q3bZx9uE3vvdL6M8ezOX79vA2Aq1nEWLqNQclHc=
 k8s.io/klog/v2 v2.60.1/go.mod h1:y1WjHnz7Dj687irZUWR/WLkLc5N1YHtjLdmgWjndZn0=
-k8s.io/kube-openapi v0.0.0-20200410145947-61e04a5be9a6/go.mod h1:GRQhZsXIAJ1xR0C9bd8UpWHZ5plfAS9fzPjJuQ6JL3E=
 k8s.io/kube-openapi v0.0.0-20211115234752-e816edb12b65/go.mod h1:sX9MT8g7NVZM5lVL/j8QyCCJe8YSMW30QvGZWaCIDIk=
 k8s.io/utils v0.0.0-20210802155522-efc7438f0176/go.mod h1:jPW/WVKK9YHAvNhRxK0md/EJ228hCsBRufyofKtW8HA=
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@@ -493,14 +335,8 @@ k8s.io/utils v0.0.0-20220210201930-3a6ce19ff2f9/go.mod h1:jPW/WVKK9YHAvNhRxK0md/
 sigs.k8s.io/json v0.0.0-20211020170558-c049b76a60c6/go.mod h1:p4QtZmO4uMYipTQNzagwnNoseA6OxSUutVw05NhYDRs=
 sigs.k8s.io/json v0.0.0-20211208200746-9f7c6b3444d2 h1:kDi4JBNAsJWfz1aEXhO8Jg87JJaPNLh5tIzYHgStQ9Y=
 sigs.k8s.io/json v0.0.0-20211208200746-9f7c6b3444d2/go.mod h1:B+TnT182UBxE84DiCz4CVE26eOSDAeYCpfDnC2kdKMY=
-sigs.k8s.io/structured-merge-diff/v3 v3.0.0-20200116222232-67a7b8c61874/go.mod h1:PlARxl6Hbt/+BC80dRLi1qAmnMqwqDg62YvvVkZjemw=
-sigs.k8s.io/structured-merge-diff/v3 v3.0.0 h1:dOmIZBMfhcHS09XZkMyUgkq5trg3/jRyJYFZUiaOp8E=
-sigs.k8s.io/structured-merge-diff/v3 v3.0.0/go.mod h1:PlARxl6Hbt/+BC80dRLi1qAmnMqwqDg62YvvVkZjemw=
-sigs.k8s.io/structured-merge-diff/v3 v3.0.1 h1:ISORLGKzslMY5RWkCSGNy5uDb3OHyEkGEhuSATvSp3A=
-sigs.k8s.io/structured-merge-diff/v3 v3.0.1/go.mod h1:PlARxl6Hbt/+BC80dRLi1qAmnMqwqDg62YvvVkZjemw=
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 sigs.k8s.io/structured-merge-diff/v4 v4.2.1 h1:bKCqE9GvQ5tiVHn5rfn1r+yao3aLQEaLzkkmAkf+A6Y=
 sigs.k8s.io/structured-merge-diff/v4 v4.2.1/go.mod h1:j/nl6xW8vLS49O8YvXW1ocPhZawJtm+Yrr7PPRQ0Vg4=
-sigs.k8s.io/yaml v1.1.0/go.mod h1:UJmg0vDUVViEyp3mgSv9WPwZCDxu4rQW1olrI1uml+o=
 sigs.k8s.io/yaml v1.2.0 h1:kr/MCeFWJWTwyaHoR9c8EjH9OumOmoF9YGiZd7lFm/Q=
 sigs.k8s.io/yaml v1.2.0/go.mod h1:yfXDCHCao9+ENCvLSE62v9VSji2MKu5jeNfTrofGhJc=

src/go/Makefile

@@ -111,6 +111,7 @@ endef
 env:
 	@echo $(TEST_ENV) | tr ' ' '\n' >.env
 
+# TODO: create envs specific to products: MySQL, PostgreSQL, MongoDB, K8
 env-up: env					## Start MongoDB docker containers cluster
 	TEST_PSMDB_VERSION=$(TEST_PSMDB_VERSION) \
 	docker-compose up \

src/go/pt-k8s-debug-collector/README.md

@@ -4,6 +4,8 @@ Collects debug data (logs, resource statuses etc.) from a k8s/OpenShift cluster.
 
 ## Data that will be collected
 
+### Data, collected for all resources
+
 ```
 "pods",
 "replicasets",
@@ -30,6 +32,38 @@ Collects debug data (logs, resource statuses etc.) from a k8s/OpenShift cluster.
 "modes",
 "your-custom-resource" (depends on 'resource' flag)
 
+```
+
+### Data, collected for PXC
+
+```
+"perconaxtradbbackups",
+"perconaxtradbclusterbackups",
+"perconaxtradbclusterrestores",
+"perconaxtradbclusters"
+```
+
+### Individual files, collected for PXC
+
+```
+"var/lib/mysql/mysqld-error.log",
+"var/lib/mysql/innobackup.backup.log",
+"var/lib/mysql/innobackup.move.log",
+"var/lib/mysql/innobackup.prepare.log",
+"var/lib/mysql/grastate.dat",
+"var/lib/mysql/gvwstate.dat",
+"var/lib/mysql/mysqld.post.processing.log",
+"var/lib/mysql/auto.cnf"
+```
+
+### Data, collected for MongoDB
+
+```
+"perconaservermongodbbackups",
+"perconaservermongodbrestores",
+"perconaservermongodbs"
+```
+
 ## Usage 
 
 `pt-k8s-debug-collector <flags>`
@@ -38,9 +72,9 @@ Flags:
 
 `--resource` targeted custom resource name (default "pxc")
 
-`--namespace` targeted namespace. By default data will be collected from all namespaces
+`--namespace` targeted namespace. By default, data will be collected from all namespaces
 
-`--cluster` targeted pxc/psmdb cluster. By default data from all available clusters to be collected 
+`--cluster` targeted pxc/psmdb cluster. By default, data from all available clusters to be collected 
 
 ## Requirements
 

src/go/pt-k8s-debug-collector/dumper/dumper.go

@@ -22,6 +22,7 @@ import (
 type Dumper struct {
 	cmd       string
 	resources []string
+	filePaths []string
 	namespace string
 	location  string
 	errors    string
@@ -51,6 +52,7 @@ func New(location, namespace, resource string) Dumper {
 		"persistentvolumeclaims",
 		"persistentvolumes",
 	}
+	filePaths := make([]string, 0)
 	if len(resource) > 0 {
 		resources = append(resources, resource)
 
@@ -60,6 +62,16 @@ func New(location, namespace, resource string) Dumper {
 				"perconaxtradbclusterbackups",
 				"perconaxtradbclusterrestores",
 				"perconaxtradbclusters")
+			filePaths = append(filePaths,
+				"var/lib/mysql/mysqld-error.log",
+				"var/lib/mysql/innobackup.backup.log",
+				"var/lib/mysql/innobackup.move.log",
+				"var/lib/mysql/innobackup.prepare.log",
+				"var/lib/mysql/grastate.dat",
+				"var/lib/mysql/gvwstate.dat",
+				"var/lib/mysql/mysqld.post.processing.log",
+				"var/lib/mysql/auto.cnf",
+			)
 		} else if resourceType(resource) == "psmdb" {
 			resources = append(resources,
 				"perconaservermongodbbackups",
@@ -71,6 +83,7 @@ func New(location, namespace, resource string) Dumper {
 	return Dumper{
 		cmd:       "kubectl",
 		resources: resources,
+		filePaths: filePaths,
 		location:  "cluster-dump",
 		mode:      int64(0o777),
 		namespace: namespace,
@@ -187,6 +200,7 @@ func (d *Dumper) DumpCluster() error {
 				}
 			}
 			if pod.Labels["app.kubernetes.io/component"] == component {
+				// Get summary
 				output, err = d.getPodSummary(resourceType(d.crType), pod.Name, pod.Labels["app.kubernetes.io/instance"], tw)
 				if err != nil {
 					d.logError(err.Error(), d.crType, pod.Name)
@@ -194,14 +208,24 @@ func (d *Dumper) DumpCluster() error {
 					if err != nil {
 						log.Printf("Error: create pt-summary errors archive for pod %s in namespace %s: %v", pod.Name, ns.Name, err)
 					}
-					continue
+				} else {
-				}
 					err = addToArchive(location, d.mode, output, tw)
 					if err != nil {
 						d.logError(err.Error(), "create pt-summary archive for pod "+pod.Name)
 						log.Printf("Error: create pt-summary  archive for pod %s: %v", pod.Name, err)
 					}
 				}
+
+				// get individual Logs
+				location = filepath.Join(d.location, ns.Name, pod.Name)
+				for _, path := range d.filePaths {
+					err = d.getIndividualFiles(resourceType(d.crType), ns.Name, pod.Name, path, location, tw)
+					if err != nil {
+						d.logError(err.Error(), "get file "+path+" for pod "+pod.Name)
+						log.Printf("Error: get %s file: %v", path, err)
+					}
+				}
+			}
 		}
 
 		for _, resource := range d.resources {
@@ -266,6 +290,7 @@ func addToArchive(location string, mode int64, content []byte, tw *tar.Writer) e
 	hdr := &tar.Header{
 		Name:    location,
 		Mode:    mode,
+		ModTime: time.Now(),
 		Size:    int64(len(content)),
 	}
 	if err := tw.WriteHeader(hdr); err != nil {
@@ -287,6 +312,23 @@ type crSecrets struct {
 	} `json:"spec"`
 }
 
+// TODO: check if resource parameter is really needed
+func (d *Dumper) getIndividualFiles(resource, namespace string, podName, path, location string, tw *tar.Writer) error {
+	args := []string{"-n", namespace, "cp", podName + ":" + path, "/dev/stdout"}
+	output, err := d.runCmd(args...)
+
+	if err != nil {
+		d.logError(err.Error(), args...)
+		log.Printf("Error: get path %s for resource %s in namespace %s: %v", path, resource, d.namespace, err)
+		return addToArchive(location, d.mode, []byte(err.Error()), tw)
+	}
+
+	if len(output) == 0 {
+		return nil
+	}
+	return addToArchive(location+"/"+path, d.mode, output, tw)
+}
+
 func (d *Dumper) getPodSummary(resource, podName, crName string, tw *tar.Writer) ([]byte, error) {
 	var (
 		summCmdName string

src/go/pt-k8s-debug-collector/main_test.go

@@ -0,0 +1,78 @@
+package main
+
+import (
+	"bytes"
+	"golang.org/x/exp/slices"
+	"os/exec"
+	"path"
+	"strings"
+	"testing"
+)
+
+/*
+Tests collection of the individual files by pt-k8s-debug-collector.
+Requires running K8SPXC instance and kubectl, configured to access that instance by default.
+*/
+func TestIndividualFiles(t *testing.T) {
+	tests := []struct {
+		name        string
+		cmd         []string
+		want        []string
+		preprocesor func(string) string
+	}{
+		{
+			// If the tool collects required log files
+			name: "pxc_logs_list",
+			// tar -tf cluster-dump-test.tar.gz --wildcards 'cluster-dump/*/var/lib/mysql/*'
+			cmd:  []string{"tar", "-tf", "cluster-dump.tar.gz", "--wildcards", "cluster-dump/*/var/lib/mysql/*"},
+			want: []string{"auto.cnf", "grastate.dat", "gvwstate.dat", "innobackup.backup.log", "innobackup.move.log", "innobackup.prepare.log", "mysqld-error.log", "mysqld.post.processing.log"},
+			preprocesor: func(in string) string {
+				files := strings.Split(in, "\n")
+				var result []string
+				for _, f := range files {
+					b := path.Base(f)
+					if !slices.Contains(result, b) && b != "." && b != "" {
+						result = append(result, b)
+					}
+				}
+				slices.Sort(result)
+				return strings.Join(result, "\n")
+			},
+		},
+		{
+			// If MySQL error log is not empty
+			name: "pxc_mysqld_error_log",
+			// tar --to-command="grep -m 1 -o Version:" -xzf cluster-dump-test.tar.gz --wildcards 'cluster-dump/*/var/lib/mysql/mysqld-error.log'
+			cmd:  []string{"tar", "--to-command", "grep -m 1 -o Version:", "-xzf", "cluster-dump.tar.gz", "--wildcards", "cluster-dump/*/var/lib/mysql/mysqld-error.log"},
+			want: []string{"Version:"},
+			preprocesor: func(in string) string {
+				nl := strings.Index(in, "\n")
+				if nl == -1 {
+					return ""
+				}
+				return in[:nl]
+			},
+		},
+	}
+
+	cmd := exec.Command("../../../bin/pt-k8s-debug-collector")
+	if err := cmd.Run(); err != nil {
+		t.Errorf("error executing pt-k8s-debug-collector: %s", err.Error())
+	}
+	defer func() {
+		cmd = exec.Command("rm", "-f", "cluster-dump.tar.gz")
+		if err := cmd.Run(); err != nil {
+			t.Errorf("error cleaning up test data: %s", err.Error())
+		}
+	}()
+
+	for _, test := range tests {
+		out, err := exec.Command(test.cmd[0], test.cmd[1:]...).CombinedOutput()
+		if err != nil {
+			t.Errorf("test %s, error running command %s:\n%s\n\nCommand output:\n%s", test.name, test.cmd[0], err.Error(), out)
+		}
+		if test.preprocesor(bytes.NewBuffer(out).String()) != strings.Join(test.want, "\n") {
+			t.Errorf("test %s, output is not as expected\nOutput: %s\nWanted: %s", test.name, test.preprocesor(bytes.NewBuffer(out).String()), test.want)
+		}
+	}
+}